Definitely looks like you made a ton of progress on the overall map

But boss dialogues seem a bit silly. Chronos seems to enjoy the word 'fools' a bit too much. I also don't think a huge bone dragon would be second-guessing himself saying 'I guess...'. Just minor things, but I feel that creatures like that should have a confident and commanding presence without even saying much. An example would be something as simple as a one-line catchphrase like the Butcher from the original Diablo game. "Ahh, fresh meat."
Honestly, I liked your older version better (or at least the first round of it). I get how the footmen are supposed to be like a trial round or something, but the first playable version gave a free round to set proper bases up without having to worry about constantly defending. It's hard enough collecting all the souls required as it is for people that haven't repeatedly played the game. Yes, challenging is good and all, but we still need time to ease into the game. After that, the difficulty should increase to footmen and then the original round 2 from your first version.
The skill was a bit glitchy and caused me to aim toward areas there weren't any living destructibles because it targets dead destructibles as well. You have a lot of trigger leaks (mostly point locations that haven't been set as a variable/removed--you did say to comment on everything

).
I'm not sure why I'm finding keys just to sell them. Maybe a good replacement would be to dig for buried treasure at certain locations to find valuables or just plain and simple gold.
It's too convenient to buy other things than the storage house when resources are so scarce. It would be better to disable them until the storage house is built (sort of like a tech tree). I still couldn't buy the storage house without cheats even after doing everything properly (or so I thought?). I was 50 lumber shy of being able to buy it.
Chickens shouldn't be sold for resources due to being an infinite supply. I racked up tens of thousands of resources in only a couple minutes. I do like how chickens are stocked by using them by the storage, but there should be instructions for doing it as well as for the rest of the quests.
Quest updates worked fine but need to be more descriptive and specific. Terrain is alright for a map like this. I'm not sure what use stats or levels are for the hero, especially since nothing increases experience up to the egg part. And I also had absolutely no idea how to collect eggs, so I got stuck there.