Lua map conversion problem

[Kakerate]

So when I run YDWE's jass2lua and open the map in MPQviewer, I see there is a folder called scripts for blizzard API functions, in lua. When I do the process of getting the map to let me change the setting to lua and save, this folder is no longer there. I assume it's why I'm seeing errors like;

Map contains invalid Jass scripts that couldn't be compiled by war3, file: war3map.lua @ 43, error: attempt to call a nil value (global 'array')

Any help?