You have selected the doodads you want to lift/lower, right?
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HIVE
Blood Raven
Redhawk
Do you press it BEFORE you place the doodad or after? I am dumb,I know.
Blood Raven
After. You place the doodad, select it, then raise/lower it. 
Also there is an option in WE to keep custom doodad altitudes when moving them, so you can reposition it afterwards. Make sure Advanced->Reset Fixed Object Heights is unticked.
Also there is an option in WE to keep custom doodad altitudes when moving them, so you can reposition it afterwards. Make sure Advanced->Reset Fixed Object Heights is unticked.
Redhawk
How do I select the doodad tho? I am not the greatest terrainer and I don't know much about it and I could use some professional help.